Pharmacometrics for Combination Therapy in Oncology Within and Across Species Variability in Time Series and Time-to-event Data

M. Baaz. PhD Thesis. Chalmers University of Technology and University of Gothenburg, 20 March 2024. Supervisors: T. Lundh, M. Jirstrand and T. Cardilin.

Numerical homogenization of network models and micro-mechanical simulation of paperboard

M. Görtz, PhD thesis, Chalmers University of Technology, 26 January 2024. Supervisors: A. Målqvist, F. Edelvik and G. Kettil.

Mathematical modeling in precision nutrition

V. Skantze, PhD thesis. Chalmers University of Technology, 23 January 2024. Supervisors: M. Jirstrand, R. Landberg; co-supervisors: M. Wallman, C. Brunius.

Computationally efficient domain decomposition and near-bell coupling of rotary spray paint bells

D. Andersson. Master thesis, Chalmers University of Technology, 12 June 2023. Supervisors: T. Johnson, A. Ruggiu

Parallel optimization for model calibration of large scale particle systems

A. Samuelsson. Master thesis, Chalmers University of Technology, 12 June 2023. Supervisors: J. Quist, C. Cromvik.

Model-based Analysis of Temporal Patterns in Atrioventricular Node Conduction during Atrial Fibrillation

M. Karlsson, Licentiate thesis, Lund University, 16 December 2022. Supervisor: F. Sandberg; Co-supervisor: M. Wallman

Joint modeling of Longitudinal and Time-To-Event data – A Comparison of Joint versus Sequential Parameter Estimation

S. Axillus. Master thesis, Chalmers University of Technology, 14 June 2022. Supervisor: T. Cardilin.

Mathematical Modelling and Methods for Load Balancing and Coordination of Multi-Robot Stations

E. Åblad, PhD thesis, Chalmers University of Technology, 13 June 2022. Supervisors: R. Bohlin, D. Spensieri.

Optimization of ergonomic grip choices in simulations of industrial assembly

M. Cederlund. Master thesis, Chalmers University of Technology, 8 June 2022. Supervisor: D. Spensieri, E. Åblad.

Development of a DEM-FEM framework for infrastructure simulation

A. Ullrich. Master thesis, Chalmers University of Technology, 2 June 2022. Supervisor: E. Solberg, Co-supervisors: K. Jareteg, C. Cromvik.

A Lagrangian-Eulerian simulation method for viscoelastic flows applied to adhesive joining

S. Ingelsten, PhD thesis, Chalmers University of Technology, 6 May 2022. Supervisor Roland Kádár, co-supervisors Andreas Mark, Fredrik Edelvik.

Experimental validation and numerical upscaling of linear network models for simulation of paper

M. Görtz. Licentiate thesis, Chalmers University of Technology, 22 April 2022. Supervisors: A. Målqvist, F. Edelvik, G. Kettil

Nonlinear Mixed Effects Modeling of Combination Therapies in Oncology

M. Baaz. Licentiate thesis, Chalmers University of Technology, 10 March 2022. Supervisors: M. Jirstrand, T. Cardilin, T. Lundh

Collision-free path coordination and cycle time optimization of industrial robot cells

D. Spensieri, PhD thesis, Chalmers University of Technology, 19 November 2021. Supervisor Dr. Johan Carlson.

Mixed Effects Modelling and Optimal Design of TNFα Response in LPS Challenge Studies – Methods and Applications in Drug Discovery

J. Larsson, Licentiate thesis, Chalmers University of Technology, 20 September 2021. Supervisors: M. Jirstrand, M. Cvijovic.

Mixed Effects Modeling of Deterministic and Stochastic Dynamical Systems – Methods and Applications in Drug Development

J. Leander, PhD thesis, Chalmers University of Technology, 4 June 2021. Supervisors: M. Jirstrand, M. Cvijovic.

Computational Methods for Design, Planning and Verification regarding Deformable 1D Objects

T. Hermansson, PhD thesis, Chalmers University of Technology, 26 March 2021.

Training Multi-Tasking Neural Networks using ADMM: Analyzing Autoencoder-Based Semi-Supervised Learning

H. Håkansson. Master thesis, Chalmers University of Technology, 10 June 2020. Supervisors: E. Gustavsson, M. Önnheim, A. Sjöberg

Optimization of Cable Harness Routing

T. Karlsson. Master thesis, Chalmers University of Technology, 8 June 2020. Supervisors: E. Åblad, T. Hermansson.

Modeling of Combination Therapy to Support Drug Discovery in Oncology

T. Cardilin, PhD thesis, Chalmers University of Technology, 4 June 2020. Supervisors: M. Jirstrand, T. Lundh, J. Gabrielsson.

A GPU Polyhedral Discrete Element Method

A. Bilock. Master thesis, Chalmers University of Technology, 3 June 2020. Supervisor: K. Jareteg.

Development of a Rigid Body Dynamics Coupling to DEM for Roller Compaction

J. Göransson Axås. Master thesis, Chalmers University of Technology, 1 June 2020. Supervisor: J. Quist.

A Lagrangian-Eulerian simulation framework for viscoelastic fluid flows

S. Ingelsten, Licentiate thesis, Chalmers University of Technology, 28 April 2020. Supervisors: R. Kádár, A. Mark, F. Edelvik.

Mathematical Modelling for Load Balancing and Minimization of Coordination Losses in Multirobot Stations

E. Åblad. Licentiate thesis, Chalmers University of Technology, 3 April 2020. Supervisors: R. Bohlin, D. Spensieri, A-B Strömberg.

Large scale simulation of particle coating using coupled CFD-DEM

A. Hariharan. Master Thesis, Chalmers University of Technology, 12 September 2019. Supervisor: K. Jareteg.

Modeling of Steel Reinforced Flexible Hose

S. Paramasivam. Master Thesis, Chalmers University of Technology, 19 August 2019. Supervisors: C. Cromvik and F. Andersson.

Multiscale methods for simulation of paper making

G. Kettil, PhD thesis, Chalmers University of Technology and University of Gothenburg. Supervisors A. Mark and A. Målqvist. 3 June 2019.

Modeling of Temperature Dependent Surface Tension Force

V. Nilsson. Master Thesis, Chalmers University of Technology, 12 December 2018. Supervisors: Johan Göhl and Andreas Mark

Modelling of drug-effect on time-varying biomarkers

F. Held. Licentiate thesis, Chalmers University of Technology, 23 November 2018. Supervisors: M. Jirstrand, J. Gabrielsson, M. Cvijovic ,E. Hoppe.

Geometry alignment for collaborative robots

M. Canavero. Master thesis, Politecnico di Torino, Department of Control and Computer Engineering, July 2018.

Including a Collaborative Robot in Digital Twin Manufacturing Systems

C. Larsen. Master thesis, Chalmers University of Technology, June 2018.

Accelerating Proximity Queries for Non-convex Geometries in a Robot Cell Context

J. Thorén. Master thesis, Chalmers University of Technology, June 2018.

Real-time Tracking of Human Motions and Adaptive Robot Path Planning for Assembly Cooperation

H. Berggren and F. Melvås. Master thesis, Chalmers University of Technology, June 2018.

Walking Generation for Virtual Manikin

E. Fägerlind. Master thesis, Chalmers University of Technology, June 2018.

Numerical modelling of paint curing in convective ovens

M. Vasudevan. Master thesis, Chalmers University of Technology, 12 June 2018. Supervisors: Andreas Mark, Tomas Johnson and Tommy Andersson.

Coupling Algorithms for Fluid Structure Interaction at Low Density Ratios

M. Ottosson. Master thesis, Chalmers University of Technology, 12 June 2018. Supervisor Andreas Mark and Christoffer Cromvik.

A Comparative Study of Black-box Optimization Algorithms for Tuning of Hyper-Parameters in Deep Neural Networks

O. Skogby Steinholtz and J. Söderström. Master thesis, Chalmers University of Technology, May 2018.

Evaluating the Performance of Federated Learning: A Case Study of Distributed Machine Learning with Erlang

A. Nilsson and S. Smith. Master thesis, Chalmers University of Technology, May 2018.

Kinetic Models in Life Science — Contributions to Methods and Applications

J. Almquist, PhD thesis, Chalmers University of Technology, supervisors M. Jirstrand, J. Nielsen, 15 December 2017.

Optimizing and Approximating Algorithms for the Single and Multiple Agent Precedence Constrained Generalized Traveling Salesman Problem

R. Salman, Licentiate thesis, Chalmers University of Technology, supervisors F. Ekstedt, P. Damaschke, 17 November 2017.

Development of fine-mesh methodologies for coupled calculations in Light Water Reactors

K. Jareteg, PhD thesis, Chalmers University of Technology, supervisors Prof. C. Demaziere, Assoc. Prof. P. Vinai, Prof. S. Sasic, 29 September 2017.

Dose-response-time data analysis

R. Andersson. PhD thesis, University of Warwick. supervisors J. Gabrielsson, M. Jirstrand, M. J. Chappell, N. D. Evans, August 2017.

Comparing a Clipmap to a Sparse Voxel Octree for Global Illumination

E. Arnebäck. Master thesis, Chalmers University of Technology, supervisor E. Sintorn, advisor J. S. Carlson, 30 June 2017.

Planning Robotic Assembly Sequences

D. Spensieri. Licentiate thesis, Chalmers University of Technology, supervisors J. S. Carlson and R. Söderberg, 29 March, 2017.

Computational Methods for Deformable 1D Objects in Virtual Product Realization

T. Hermansson. Licentiate thesis. Chalmers University of Technology, supervisors J. S. Carlson and R. Söderberg, 3 March, 2017.

Structural identifiability and indistinguishability in mixed-effects models

D. Janzén. PhD thesis, University of Warwick, supervisors M. J. Chappell, N. D. Evans, M. Jirstrand, December 2016.

Inventing a Grounded Language by Playing Guess Who? – Creating a Communication Protocol with Deep Multi-Agent Reinforcement Learning

E. Jorge. Master thesis, Chalmers University of Technology and University of Gothenburg, supervisors M. Kågebäck and E. Gustavsson, examinator R. Jörnsten, November 2016.

Methods for Direct Optimal Control of Multibody Systems

S. Björkenstam. Licentiate thesis, Chalmers University of Technology, supervisors J.S. Carlson, S. Leyendecker and B. Lennartsson, November 2016.

Data-driven modeling of combination therapy in oncology

T. Cardilin. Licentiate thesis, Chalmers University of Technology and University of Gothenburg, supervisors M. Jirstrand, T. Lundh and J. Gabrielsson, September 2016.

A Novel Fiber Interaction Method for Simulation of Early Paper Forming

G. Kettil. Licentiate thesis, Chalmers University of Technology and University of Gothenburg, supervisor A. Målqvist and A. Mark, August 2016.

Robust intersection of hexahedral meshes and triangle meshes with applications in finite volume methods

F. Svelander. Licentiate thesis, Chalmers University of Technology and University of Gothenburg, supervisors A. Mark and A. Logg, August 2016.

Intersection-free load balancing for industrial robots – Modelling and algorithm development

E. Åblad. Master thesis, Chalmers University of Technology and University of Gothenburg, supervisor D. Spensieri, examinator A-B Strömberg, August 2016.

Sensitivity-based Gradients for Parameter Estimation in Nonlinear Mixed Effects Models with Deterministic and Stochastic Dynamics

H K Òlafsdóttir. Master thesis, Chalmers University of Technology, supervisor J. Almquist, June, 2016.

Geometrical Optimization of Plate-Fin Heat-Sink

D. Irawan. Master thesis, Chalmers University of Technology, supervisors T. Andersson and A. Mark, June 2016.

Machine Learning Based Error Prediction for Spray Painting Applications

P. Lange. Master thesis, Chalmers University of Technology, supervisor N. Karlsson, June 2016.

Implementation and Validation of Dynamic Contact Angle Models

J. Göhl. Master thesis, Chalmers University of Technology, supervisors A. Mark and M. Svensson, June 2016.

Modelling Transferability in Active Acoustic Spectroscopy

M. Gyllenhammar. Master thesis, Chalmers University of Technology, supervisor F. Ekstedt, June, 2016.

Analysis and visualization for production flow of a pharmaceutical pilot plant with a high product variety

A. Ingelström, C. Klang. Bachelor thesis, Chalmers University of Technology, supervisor C. Dudas, June 2016.

Algorithms for the Precedence Constrained Generalized Travelling Salesperson Problem

R. Salman, Master thesis, Chalmers University of Technology, supervisor F. Ekstedt, August 27, 2015

Flexible surface of air bellow simulated in IPS

A. Björklund, P. Eljas. Bachelor thesis, Chalmers University of Technology, supervisor J. Nyström, 2015

Three-species negative corona discharge simulations using domain decomposition

B. Svedung Wettervik. Master thesis, Chalmers University of Technology, supervisor T. Johnson, May 2015.

Variation Simulation Customized for Composites by Including FEM Simulations of Orthotropic Lamina

C. Jareteg. Licentiate thesis, Chalmers University of Technology and University of Gothenburg, supervisors S. Larsson and F. Edelvik, June 2015.

Simulation of Electro-Optic Modulators by a Time-Domain Beam-Propagation Method

E. Solberg. Licentiate thesis, Chalmers University of Technology and University of Gothenburg, supervisors S. Larsson and F. Edelvik, April 2015.

Contributions to nonlinear mixed-effects modeling

J. Leander, Licentiate thesis, Chalmers University of Technology, supervisors M. Jirstrand and T. Lundh, examiner B. Wennberg, September 2014.

Human Interaction Solutions for Intuitive Motion Generation of a Virtual Manikin

L. Caltagirone, Master thesis, Chalmers University of Technology, supervisors N. Delfs, P. Mårdberg, examiner M. Wahde, August 2014.

Contact Force Modeling in the Paper Forming Process

G. Kettil, F. Svelander, Master thesis, Chalmers University of Technology, supervisor A. Mark, examiner Anders Logg, June 2014.

Statistical methods for estimation of paint thickness and its variance

H. Marling, Master thesis, Chalmers University of Technology, supervisors F. Ekstedt, B. Andresson, June 2014.

An Imaging System for Semantic Image Segmentation

S. Pfreundschuh, Master thesis, Chalmers University of Technology, supervisor J. Karlsson, examiner T. Gebäck, June 2014.

Point Cloud Simplification and Processing for Path-Planning

D. Eriksson, Master thesis, Chalmers University of Technology, supervisor E. Shellshear, March 2014.

Modeling and simulation of rotary bell spray atomizers in automotive paint shops

B. Andersson, PhD thesis, Chalmers University of Technology, supervisor A. Mark, L. Davidson, December 2013.

SIMD Optimized Bounding Volume Hierarchies for Fast Proximity Queries

R. Ytterlid, Master thesis, Chalmers University of Technology, supervisor E. Shellshear, October 2013.

Computational Methods for Estimation of Cardiac Electrophysiological Conduction Parameters in a Patient Specific Setting

M. Wallman, PhD thesis, University of Oxford, supervisor B. Rodriguez, September 2013.

An Incompressible Navier-Stokes Equations Solver on the GPU Using CUDA

N. Karlsson, Master thesis, Chalmers University of Technology, supervisor A. Mark, examiner U. Assarsson, August 2013.

Path optimization for multi-robot station minimizing dresspack wear

J. Kressin, Master thesis, Chalmers University of Technology Department of Signals and Systems, supervisors D. Segerdahl and T. Hermansson, examiner B. Lennartson, May 2013.

Droplet Breakup in Automotive Spray Painting

Björn Andersson, Licenciate thesis, supervisor Andreas Mark, moderator Dr Anders Karlsson, Volvo, January 13, 2012.

Contrast enhancement, denoising and fusion in dark video for applications in automobile safety

N. Jungenfelt, T. Raski, Master thesis, Chalmers University of Technology, supervisors J. Karlsson, M. Kvarnström, examiner T. McKelvey, June 2012.

Solving inverse problems in EEG-based source localization by combining parametric and non-parametric methods

C Jareteg, Master thesis, University of Gothenburg, supervisor S Jakobsson, examiner S Larsson, June 2012.

A Wave Propagation Solver for Computational Aero-Acoustics

E Solberg, Master thesis, University of Gothenburg, supervisor R Sandboge, examiner S Larsson, February 2012.

Approximating Optimal Swept Volumes in Two and Three Dimensions

C. Bengtsson, Master thesis, GU, supervisor E. Shellshear, Examiner B. Johansson, October 2011.

Using CSP Solvers for Partial Configuration in Automotive Configuration Problems

O. Sachenkova, S. Thapaliya, Master thesis, Chalmers, supervisor F. Ekstedt, examiner C. Strannegård, July 2011.

Development of a nonlinear Finite Element beam model for dynamic contact problems

E. Svenning, Master thesis, Chalmers, supervisor B. Andersson, A. Mark, examiner K. Runesson, June 2011.

Simulation of Thermal Spraying in IPS Virtual Paint

A. Berce, Master thesis, Chalmers, supervisor B. Andersson, A. Mark, examiner L. Davidson, June 2011.

Adaptive Bounding Volume Hierarchies for Deformable Surface Models

F. Bitar, Master thesis, Chalmers, supervisor E. Shellshear, examiner U. Assarsson, June 2011.

Implementation of a Generic Virtual Robot Controller

V. Jönsson, T. Ustyan, Master thesis, Chalmers, supervisors S. Björkenstam, R. Bohlin, D. Segerdahl, examiner M. Fabian, June 2011.

Modeling and Simulation of Cultivator Load Signals with a Fatigue Damage Perspective

X. Zhao, Master thesis, Chalmers, Supervisor M. Kvarnström, Examiner I. Rychlik, June 2011.

A parameter estimation method for continuous time dynamical systems based on the unscented Kalman filter and maximum likelihood

J. Carlsson, C. Nordheim, Master thesis, Chalmers University of Technology, supervisors J. Hagmar, M. Anguelova, examiner J. Sjöberg, May 2011.

Manikin in Time; Development of a Virtual Manikin with Inverse Kinematics and Comfort

N. Delfs, Master thesis, GU, supervisor R. Bohlin, Examiner T. Ericsson, May 2011.

Analytical Modelling of Aggregate Stiffness Parameters for Helically Bundled Cables

K. Hahn, Master thesis, Chalmers, supervisor T. Hermansson, examiner I. Rychlik , June 2010.

Implementation of an interconnection between softPLC and simulation software

P. Magnusson, Master thesis, Chalmers, supervisor R. Bohlin , examiner M. Fabian , October 2009.

Geometric Variation in Injection Molding

S. Lorin, Master thesis, Chalmers, supervisor F. Edelvik and J. S. Carlson, examiner I. Rychlik, June 2009.

Development of roller hemming process in automotive industry – Saab Automobile AB

B. Saboori, Master thesis, Chalmers, supervisors J. S. Carlson and R. Söderberg, June 2009.

Effective methods for solving the balanced and synchronised multiple TSP using genetic algorithms

G. Eek, C. Eriksson, Master thesis, University of Gothenburg, supervisor F. Ekstedt , examiner M. Wahde, June 2009.

Surface interpolation for detail restoration

F. Andersson, Master thesis, Chalmers, supervisors R. Andersson, T. Hermansson and B. Johansson, June 2009.

Robotik och invers kinematik

N. Delfs, S. Gustafsson, P. Mårdberg, Bachelor report, Chalmers, supervisors R. Bohlin, J. S. Carlson, T. Ericsson, examiner C.-H. Fant, June 2009.

Statistical methods for improving surrogate models in antenna optimization

D. Sjögren, Master thesis, Chalmers, supervisor S. Jakobsson, examiner Professor T. Norberg, April 2009.

Simulation based multiobjective optimization of diesel combustion engines

M. S. Ul Hasnain, Master thesis, Chalmers, supervisor S. Jakobsson, examiner S. Andersson, March 2008.

Parameter Estimation Methods for Continuous Time Dynamical Systems Given Discrete Time Measurements

N Skaar, Master thesis, Chalmers, supervisor M Jirstrand, examiner B Mehlig, January 2008.

Beräkningseffektiv dilatation i 3D

G. Eek and M. Olvegård, Bachelor report, University of Gothenburg, supervisor F. Ekstedt, examiner M. Karlsteen, December 2007.

A Method for Simulation Based Optimization Using Radial Basis Functions

J. Rudholm and A. Wojciechowski, Master thesis, Chalmers, supervisor S. Jakobsson, examiner M. Patriksson, August 2007.

Development of Parameter Estimation Methods for Biochemical Reaction Systems

P. Zarrineh, Master thesis, Chalmers, supervisor M. Jirstrand, examiner O. Nerman, February 2007.

Mathematical Modelling of a Xenopus laevis Oocyte Expressing the NBC and MCT Membrane Transporters – Towards a Better Understanding of the Neuron-Glial Interplay

J. Almquist, N. Lämås, Master thesis, Chalmers, supervisor H. Schmidt, examiners K. Lindgren and C. Breitholtz, February 2007.

New Approaches to Model Reduction of Biochemical Reaction Systems

M. Sunnåker, Master thesis, Chalmers, supervisor H. Schmidt, examiner K. Lindgren, December 2006.

Core-box Modelling – Theoretical Contributions and Applications to Glucose Homeostasis Related Systems

G. Cedersund, Doctoral thesis, Chalmers, supervisor M. Jirstrand, October 2006.

Optimering av robotceller

C. Roth and J. Edman, Master thesis, Chalmers, supervisors J. S. Carlson and R. Bohlin, examiner S. Ekered, June 2006.

Construction of an Optimal Linkage Arm Using Structural Optimization

E. Gudfinnsson, N. Á. Sigfússon, Master thesis, Chalmers, supervisor A-B Strömberg, examiner M. Patriksson, May 2006.

Automatic correction of surface normals on 3D models

J. Havner and O. Karlsson, Master thesis, Chalmers, supervisors J. S. Carlson and R. Bohlin, May 2005.

Evaluation and Development of Methods for Identification of Biochemical Networks

A. Jauhiainen, Master thesis, Linköping University, supervisor M. Jirstrand, January 2005.

Development and Implementation of a Fast and Memory Efficient Sweep Volume Generation System

D. Segerdahl, S. Tafuri, Master thesis, Chalmers, supervisors J. S. Carlson and R. Bohlin, examiner L. Lindkvist, 2004.

Path Planning for Coordinate Measuring Machines

J. Svenberg, Master thesis, Chalmers, adviser J. S. Carlson and R. Bohlin, June 2004.

Optimization of opportunistic replacement activities in deterministic and stochastic multi-component systems

N. Andréasson, Licentiate thesis, Chalmers, co-adviser A-B Strömberg, May 2004.
Photo credits: Nic McPhee