Publications
Robust Contact Computation in Non-Rigid Variation Simulation
R. S. Tabar, S. Lorin, L. Lindkvist, K. Wärmefjord, R. Söderberg. Journal of Computing and Information Science in Engineering, August 2024, 24(8), Paper No: JCISE-23-1569, Online 7 June 2024.
Machine learning surrogates for the optimization of curing ovens
Q. Parsons, D. Nowak, M. Bortz, T. Johnson, A. Mark, F. Edelvik. Engineering Applications of Artificial Intelligence Vol. 133, Part C, July 2024, 108086. Online 9 April 2024.
Adjusting for Covariates and Assessing Modeling Fitness in Machine Learning Using MUVR2
Y. Yan, T. Schillemans, V. Skantze, C. Brunius. Bioinformatics Advances, vbae051, Oxford University Press. 4 April 2024.
Iterative method for large-scale Timoshenko beam models assessed on commercial-grade paperboard
M. Görtz, G. Kettil., A. Målqvist, M. Fredlund, F. Edelvik. Computational Mechanics. 10 May 2024.
LocalPoly interpolation: Generalizing tricubic for Cn continuity in M-dimensional spaces
E. Åblad, Engineering Reports. 2024;e12888. 28 March 2024.
Effects on district heating networks by introducing demand side economic model predictive control
H. Håkansson, M. Önnheim, E. Gustavsson, M. Jirstrand. Energy & Buildings, Vol. 309, 2024-04-15, 114051. 12 March 2024.
Towards digital twinning for multi-domain simulation workflows in urban design: a case study in Gothenburg
A. Gonzalez-Caceres, F. Hunger, J. Forssén, S. Somanath, A. Mark, V. Naserentin, J. Bohlin, A. Logg, B. Wästerberg, D. Komisarczyk, F. Edelvik, A. Hollberg. Journal of Building Performance Simulation, 1-22. Online 27 February 2024.
Automatic Cable Harness Layout Routing in a Customizable 3D Environment
T. Karlsson, E. Åblad, T. Hermansson, J.S. Carlson, G. Tenfält. Computer-Aided Design, Vol. 169, 103671, 20 January 2024.
Data-driven analysis and prediction of dynamic postprandial metabolic response to multiple dietary challenges using dynamic mode decomposition
V. Skantze, M. Jirstrand, C. Brunius, A-S Sandberg, R. Landberg, M. Wallman. Frontiers in nutrition, Nutrition Methodology, Vol. 10 - 2023, 12 January 2024.
Model-based estimation of AV-nodal refractory period and conduction delay trends from ECG
M. Karlsson, P. G. Platonov, S. R. Ulimoen, F. Sandberg, M. Wallman. Frontiers in Physiology, Sec. Cardiac Electrophysiology, Vol.14 - 2023. 12 January 2024.
Predicting Wind Comfort in an Urban Area: A Comparison of a Regression- with a Classification-CNN for General Wind Rose Statistics
J. Werner, D. Nowak, F. Hunger, T. Johnson, A. Mark, A. Gösta, F. Edelvik. Machine Learning and Knowledge Extraction. 2024; 6(1):98-125, 4 January 2024.
Proof of Concept in a Full-Scale Field Test for the Novel Micro-Turbine Drilling Technology from a Cased Borehole in Granite Rock
N. Geissler, F. Garsche, V. Samus, B. Polat, F. Di Mare, R. Bracke. SPE Journal (2023), 10 November 2023.
Numerical homogenization of spatial network models
F. Edelvik, M. Görtz, F. Hellman, G. Kettil, A. Målqvist. Computer Methods in Applied Mechanics and Engineering, Vol 418, Part B, 11659. 5 January 2024. Online 9 November 2023.
Differential Responders to a Mixed Meal Tolerance Test Associated with Type 2 Diabetes Risk Factors and Gut Microbiota—Data from the MEDGI-Carb Randomized Controlled Trial
V. Skantze, T. Hjorth, M. Wallman, C. Brunius, J. Dicksved, E. A. Pelve, A. Esberg, M. Vitale, R. Giacco, G. Costabile, R. E. Bergia, M. Jirstrand, W. W. Campbell, G. Riccardi, R. Landberg. Nutrients. 2023; 15(20):4369. 15 October 2023.
Plasma Pharmacokinetics of N-Acetylgalactosamine-Conjugated Small-Interfering Ribonucleic Acids (GalNAc-Conjugated siRNAs)
S. Sten, T. Cardilin, M. Antonsson, P. Gennemark. Clinical Pharmacokinetics (2023), 12 October 2023.
A multi-scale simulation method for powder coating with moving powder guns
T. Johnson, A. Ruggiu, M. Quast, K. Pulli, A. Mark, M. Bader, N. Sandgren, M. Cudazzo, F. Edelvik. Journal of Electrostatics, Vol. 125, September 2023. Online 27 August 2023
Extensive screening reveals previously undiscovered aminoglycoside resistance genes in human pathogens
D. Lund, R. Dirk Coertze, M. Parras-Moltó, F. Berglund, C-F. Flach, A. Johnning, D.G.J. Larsson, E Kristiansson. Communications Biology, 6(1), 812. 3 August 2023.
Iterative solution of spatial network models by subspace decomposition
M. Görtz, F. Hellman, A. Målqvist. Mathematics of Computation, Vol 93, January 2024, pp. 233–258. Online June 20, 2023
Model-based Prediction of Progression-Free Survival for Combination Therapies in Oncology
M. Baaz, T. Cardlin, M. Jistrand. CPT Pharmacometrics Systems Pharmacology, 10 June 2023.
Replenishing the pipeline: A quantitative approach to optimising the sourcing of new projects
S. J. Wiklund, M. Önnheim, M. Ytterstad. Pharmaceutical Statistics, The Journal of Applied Statistics in the Pharmaceutical Industry. 1 June 2023.
Model-Based Assessment of Combination Therapies – Ranking of Radiosensitizing Agents in Oncology
M. Baaz, T. Cardilin, F. Lignet, A. Zimmermann, S. El Bawab, J. Gabrielsson, M. Jirstrand. BMC Cancer 23, 409 (2023). 6 May 2023.
Model Predictive Control when utilizing LSTM as dynamic models
M. Jung, P. Renato da Costa Mendes, M. Önnheim, E. Gustavsson. Engineering Applications of Artificial Intelligence, Vol. 123, Part B, August 2023, 106226. Online 26 April, 2023.
Multiscale methods for solving wave equations on spatial networks
M. Görtz, P. Ljung, A. Målqvist, Computer Methods in Applied Mechanics and Engineering, 410, March 2023.
Outbreak of OXA-48-producing Enterobacteriaceae in a neonatal intensive care unit in Western Sweden
E. T. Hallbäck, A. Johnning, S. Myhrman, M. Studahl, E. Hentz, A. Elfvin, I. Adlerberth, European Journal of Clinical Microbiology & Infectious Diseases, 1-9. 20 March 2023.
Latent antibiotic resistance genes are abundant, diverse, and mobile in human, animal, and environmental microbiomes
J. S. Inda-Díaz, D. Lund, M. Parras-Moltó, A. Johnning, J. Bengtsson-Palme, E. Kristiansson. Microbiome, 11(1), 44. 8 March 2023.
Strain-level bacterial typing directly from patient samples using optical DNA mapping
M. Nyblom, A. Johnning, K. Frykholm, M. Wrande, V. Müller, G. Goyal, M. Robertsson, A. Dvirnas, T. Sewunet, S. KK, T. Ambjörnsson, C. G. Giske, L. Sandgren, E. Kristiansson, F. Westerlund. Communications Medicine, 3(1), 31. February 23, 2023
Utilization of convolutional neural networks for H I source finding – Team FORSKA-Sweden approach to SKA Data Challenge 2
H. Håkansson, A. Sjöberg, M. C. Toribio, M. Önnheim, M. Olberg, E. Gustavsson, M. Lindqvist, M. Jirstrand, J. Conway. Astronomy & Astrophysics, Vol 671, March 2023, A39.
Addressing wind comfort in an urban area using an immersed boundary framework
P. Vanky, A. Mark, F. Hunger, M. Haeger-Eugensson, J. Tarraso, M. Adelfio, A. Sasic Kalagasidis, G. Sardina, Technische Mechanik, Vol. 43, Is.1, (2023), 151–161. 16 February 2023
3D Model-Based Large-Volume Metrology Supporting Smart Manufacturing and Digital Twin Concepts
R. P. Lindqvist, D. Strand, M. Nilsson, V. Collins, J. Torstensson, J. Kressin, D. Spensieri, A. Archenti. Metrology. 2023; 3(1):29-64. January 18, 2023.
Overview and comprehensive performance description of a new Micro Turbine Drilling – MTD technology for drilling laterals into hard reservoir rock
N. Geißler, F. Garsche, F. di Mare, R. Bracke. International Journal of Rock Mechanics and Mining Sciences, Vol 161, January 2023.
Identification of metabotypes in complex biological data using tensor decomposition
V. Skantze, M. Wallman, A-S. Sandberg, R. Landberg, M. Jirstrand, C. Brunius. Chemometrics and Intelligent Laboratory Systems, December 18 2022.
Online geometry assurance in individualized production by feedback control and model calibration of digital twins
A. Sjöberg, M. Önnheim, O. Frost, C. Cronrath, E. Gustavsson, B. Lennartson, M. Jirstrand. Journal of Manufacturing Systems, 66:71-81, Online December 10, 2022
Spatial–Temporal Load Balancing and Coordination of Multi-Robot Stations
E. Åblad, D. Spensieri, R. Bohlin, J. S. Carlson and A. -B. Strömberg. IEEE Transactions on Automation Science and Engineering, October 25, 2022
Network model for predicting structural properties of paper
M. Görtz, G. Kettil, A. Målqvist, M. Fredlund, K. Wester, F. Edelvik. Nordic Pulp & Paper Journal, October 14 2022.
Robust optimization of a bi-objective tactical resource allocation problem with uncertain qualification costs
S. Fotedar, A.-B. Strömberg, E. Åblad, T. Almgren. Autonomous Agents and Multi-Agent Systems, October 10, 2022. 36(2)
Coalescence-induced jumping of droplets from superhydrophobic surfaces – the effect of contact-angle hysteresis
K. Konstantinidis, J. Göhl, A. Mark, S. Sasic. Physics of Fluid, 2022. Online October 8.
A simulation study on the effect of layer thickness variation in selective laser melting
V. Ramesh Sagar, S. Lorin, K. Wärmefjord, R. Söderberg. Journal of Manufacturing Science and Engineering, 1-13. Online October 5, 2022.
ECG based assessment of circadian variation in AV-nodal conduction during AF—Influence of rate control drugs
M. Karlsson, M. Wallman, P. G. Platonov, S. R. Ulimoen, F. Sandberg. Frontiers in Physiology, October 4 2022.
An atrioventricular node model incorporating autonomic tone
F. Plappert, M. Wallman, M. Abdollahpur, P. G. Platonov, S. Östenson, F. Sandberg. Frontiers in Physiology 2022, 13. Online 15 September 2022.
Optimizing study design in LPS challenge studies for quantifying drug induced inhibition of TNFα response: Did we miss the prime time?
J. Larsson, E. Hoppe, M. Gautrois, M. Cvijovic, M. Jirstrand. European Journal of Pharmaceutical Sciences, Vol 176, September 1, 2022, 106256.
Coalescence-induced jumping of microdroplets on superhydrophobic surfaces – A numerical study
K. Konstantinidis, J. Göhl, A. Mark, S. Sasic. The Canadian Journal of Chemical Engineering, August 5, 2022.
Optimized scaling of translational factors in oncology: from xenografts to RECIST
M. Baaz, T. Cardilin, F. Lignet, M. Jirstrand. Cancer Chemotherapy and Pharmacology 90, 239-150. August 3 2022.
Mathematical Modelling and Methods for Load Balancing and Coordination of Multi-Robot Stations
E. Åblad, PhD thesis, Chalmers University of Technology, 13 June 2022. Supervisor: A-B Strömberg; Co-supervisors: R. Bohlin, D. Spensieri.
Efficient Simulation of Convective Ovens in Automotive Paintshops
T. Johnson, A. Mark, N. Sandgren, L. Erhardsson, S. Sandgren, F. Edelvik. Journal of Heat Transfer. September 2022, 144(9):094501. Online June 7 2022.
An integrative pharmacokinetic-cardiovascular physiology modelling approach based on in vivo dog studies including five reference compounds
M. Wallman, J. M. Borghardt, E. Martel, N. Pairet, M. Markert, M. Jirstrand. Journal of Pharmacological and Toxicological Methods, Vol. 115, May-June 2022.
Interactive formal specification for efficient preparation of intelligent automation systems
M. Dahl, C. Larsen, E. Eros, K. Bengtsson, M. Fabian, P. Falkman. CIRP Journal of Manufacturing Science and Technology, Volume 38, August 2022, 129-138. Online 2 May 2022.
Exposure-response modeling improves selection of radiation and radiosensitizer combinations
T. Cardilin, J. Almquist, M. Jirstrand, A. Zimmermann, F. Lignet, S. El Bawab, J. Gabrielsson. Journal of Pharmacokinetics and Pharmacodynamics 49(2):167-178. April 2022.
Generating Optimized Trajectories for Robotic Spray Painting
D. Gleeson, S. Jakobsson, R. Salman, F. Ekstedt, N. Sandgren, F. Edelvik, J. S. Carlson, B. Lennartson. IEEE Transactions on Automation Science and Engineering, 16 March 2022.
Design and biofabrication of a leaf-inspired vascularized cell-delivery device
S. Sämfors, E. M. Niemi, K. Oskarsdotter, C. Villar Egea, A. Mark, H. Scholz, P. Gatenholm. Bioprinting, Online 1 March 2022.
A New Heat Source Model for Keyhole Mode Laser Welding
S. Lorin, J. Madrid, R. Söderberg, K. Wärmefjord. Journal of Computing and Information Science in Engineering, 22(1): 011004 (10 pages), February 2022.
A stochastic mixed effects model to assess treatment effects and fluctuations in home-measured peak expiratory flow and the association with exacerbation risk in asthma
J. Leander, M. Jirstrand, U. G. Eriksson, R. Palmér. CPT: Pharmacometrics & Systems Pharmacology, 11(2):212-224. February 2022
Large-scale characterization of the macrolide resistome reveals high diversity and several new pathogen-associated genes
D. Lund, N. Kieffer, M. Parras-Moltó, S. Ebmeyer, F. Berglund, A. Johnning, D. G. J. Larsson, E. Kristiansson. Microbial Genomics 8.1: 000770, 27 January 2022.
Simulation of viscoelastic squeeze flows for adhesive joining applications
S. Ingelsten, A. Mark, R. Kádár, F. Edelvik, Journal of Non-Newtonian Fluid Mechanics, Vol. 300 February 2022, Available online 1 January 2022.
Combining dense and sparse labeling in optical DNA mapping
E. Torstensson, G. Goyal, A. Johnning, F. Westerlund & T. Ambjörnsson. PLOS ONE, 16(11), 29 November 2021
Plastic Extrusion Process Optimization by Digital Twins
A. Sarishvili, D. Just, K. Moser, A. Wirsen, J. Diemert, M. Jirstrand. Chemie Ingenieur Technik, 10 November 2021.
Non-invasive Characterization of Human AV-Nodal Conduction Delay and Refractory Period During Atrial Fibrillation
M. Karlsson, F. Sandberg, S. R. Ulimoen, M. Wallman. Frontiers in Physiology 28 October 2021.
A Simulation Study on the Effect of Particle Size Distribution on the Printed Geometry in Selective Laser Melting
V. Ramesh Sagar, S. Lorin, J. Göhl, J. Quist, K. Jareteg, C. Cromvik, A. Mark, F. Edelvik, K. Wärmefjord, R. Söderberg. Journal of Manufacturing Science and Engineering May 2022, 144(5): 051006 (10 pages). Online: 25 October 2021.
Exposure-response modeling improves selection of radiation and radiosensitizer combinations
T. Cardilin, J. Almquist, M. Jirstrand, A. Zimmermann, F. Lignet, S. El Bawab, J. Gabrielsson. Journal of Pharmacokinetics and Pharmacodynamics, 8 October 2021
Nonlinear Mixed Effects Modeling of Deterministic and Stochastic Dynamical Systems in Wolfram Mathematica
J. Leander, J. Almquist, A. Johnning, J. Larsson, M. Jirstrand. IFAC-PapersOnLine Vol. 54, Issue 7, 2021, Pages 409-414. Online 15 September, 2021.
Applied Calibration and Validation Method of Dynamic Process Simulation for Crushing Plants
K. Bhadani, G. Asbjörnsson, B. Schnitzer, J. Quist, C. Hansson, E. Hulthén, M. Evertsson. Minerals 11, no. 9: 921. 25 August 2021.
A hydrodynamic basis for off-axis Brownian diffusion under intermediate confinements in micro-channels
A.S. Kannan, A. Mark, D. Maggiolo, G. Sardina, S. Sasic, H. Ström. International Journal of Multiphase Flow, Vol. 143, 2021, 103772, 9 August 2021.
Artificial Intelligence for Hospital Health Care: Application Cases and Answers to Challenges in European Hospitals
M. Klumpp, M. Hintze, M. Immonen, F. Ródenas-Rigla, F. Pilati, F. Aparicio-Martínez, D. Çelebi, T. Liebig, M. Jirstrand, O. Urbann, M. Hedman, JA. Lipponen, S. Bicciato, A-P. Radan, B. Valdivieso, W. Thronicke, D. Gunopulos, R. Delgado-Gonzalo. Healthcare. 2021; 9(8):961, 29 July 2021.
Thixotropy of cellulose nanocrystal suspensions
M. Fazilati, S. Ingelsten, S. Wojno, T. Nypelö, R. Kádár. Journal of Rheology 65(2021). Online 19 July 2021.
Second-generation TNFα turnover model for improved analysis of test compound interventions in LPS challenge studies
J. Larsson, E. Hoppe, M. Gautrois, M. Cvijovic, M. Jirstrand. European Journal of Pharmaceutical Sciences, Vol. 165, 1 October 2021, 105937. Online 11 July 2021.
Routing of curves with piecewise constant curvature applied to routing of preformed hoses
T. Hermansson, E. Åblad. Journal of Computer-Aided Design, Volume 139, 2021. Online 29 June 2021.
Mathematical Model Predicts that Acceleration of Diabetic Wound Healing is Dependent on Spatial Distribution of VEGF-A mRNA (AZD8601)
S.M. Rikard, P.J. Myers, J. Almquist, P. Gennemark, A.C. Bruce, M. Wågberg, R. Fritsche-Danielson, K.M. Hansson, M.J. Lazzara, and S.M. Peirce. Cellular and Molecular Bioengineering, 15 June 2021.
Modeling and optimization of implementation aspects in industrial robot coordination
D. Spensieri, E. Åblad, R. Bohlin, J.S. Carlson, R. Söderberg. Robotics and Computer-Integrated Manufacturing 69, 102097. June 2021.
Simulation of jet printing of solder paste for surface mounted technology
G.E. Mårtensson, J. Göhl, A. Mark, Soldering & Surface Mount Technology, Online 13 May 2021.
A new heat source model for keyhole mode laser welding
S. Lorin, J. Madrid, R. Söderberg, K. Wärmefjord. Journal of Computing and Information Science in Engineering, 1-14. Online 11 May, 2021.
Exact makespan minimization of unrelated parallel machines
E. Åblad, A-B. Strömberg, D. Spensieri. Open Journal of Mathematical Optimization, Vol. 2 (2021), article no. 2, 15 p. Online 11 May 2021.
Optimization of additive chemotherapy combinations for an in vitro cell cycle model with constant drug exposures
T. Cardilin, T. Lundh, M. Jirstrand. Mathematical Biosciences, 108595. Online 5 April 2021.
Quasi-Static path optimization for industrial robots with dress packs
T. Hermansson, J.S. Carlson, J. Linn, J. Kressin. Journal of Robotics and Computer-Integrated Manufacturing Vol. 68, April 2021, 102055.
Natural language processing methods for knowledge management – Applying document clustering for fast search and grouping of engineering documents
I.Ö. Arnarsson, O. Frost, E. Gustavsson, M. Jirstrand, J. Malmqvist. Concurrent Engineering, 6 March 2021.
An Integrative Approach for Improved Assessment of Cardiovascular Safety Data
M. Wallman, S. Scheuerer, E. Martel, N. Pairet, M. Jirstrand, J. Gabrielsson. Journal of Pharmacology and Experimental Therapeutics, JPET-AR-2020-000348. 1 March 2021.
Efficient Spot Welding Sequence Simulation in Compliant Variation Simulation
R. Sadeghi Tabar, S. Lorin, C. Cromvik, L. Lindkvist, K. Wärmefjord, R. Söderberg. Journal of Manufacturing Science and Engineering, Jul 2021, 143(7): 071009 (10 pages). Online 26 February 2021.
Collision-free robot coordination and visualization tools for robust cycle time optimization
D. Spensieri, E. Ådal, J. Kressin, J. Carlson, A. Andersson. Journal of Computing and Information Science in Engineering, Aug. 2021, 21(4): 041011 (9 pages). Online 23 February, 2021.
Continuous Collision Detection of Pairs of Robot Motions Under Velocity Uncertainty
E. Åblad, D. Spensieri, R. Bohlin, A-B.Strömberg, in IEEE Transactions on Robotics, p. 1-12. 25 January 2021
OODIDA: On-Board/Off-Board Distributed Real-Time Data Analytics for Connected Vehicles
G. Ulm, S. Smith, A. Nilsson, E. Gustavsson, M. Jirstrand. Data Science and Engineering Vol. 6, pages102–117(2021). 22 January 2021.
A Backwards-Tracking Lagrangian-Eulerian Method for Viscoelastic Two-Fluid Flows
S. Ingelsten, A. Mark, R. Kádár, F. Edelvik. Appl. Sci. 2021, 11, 439. 5 January 2021.
The Knudsen Paradox in Micro-Channel Poiseuille Flows with a Symmetric Particle
A. S. Kannan, T. S. B. Narahari, Y. Bharadhwaj, A. Mark, et al. Applied Sciences 11 (1), 351, 31 December 2020.
Facilitating Rapid Prototyping in the Distributed Data Analytics Platform OODIDA via Active-Code Replacement
G. Ulm, S. Smith, A. Nilsson, E. Gustavsson, M. Jirstrand. Array, Vol. 8, December 2020, 100043.
Multicriteria Optimization of an Oven with a Novel ε-constraint Based Sandwiching Method
D. Nowak, T. Johnson, A. Mark, C. Ireholm, F. Pezzotti, L. Erhardsson, D. Ståhlberg, F. Edelvik, K-H Küfer. Journal of Heat Transfer, 143(1) 012101, online 4 November 2020
Comprehensive screening of genomic and metagenomic data reveals a large diversity of tetracycline resistance genes
F. Berglund, M-E. Böhm, A. Martinsson, S. Ebmeyer, T. Österlund, A. Johnning, D.G.J. Larsson, E. Kristiansson. Microbial Genomics 6.11: e000455 , 30 October 2020
A Robust Design Perspective on Factors Influencing Geometric Quality in Metal Additive Manufacturing
V. R. Sagar, S. Lorin, K. Wärmefjord, R. Söderberg. Journal of Manufacturing Science and Engineering, 1-35, 12 October 2020.
An updated phylogeny of the metallo-β-lactamases
F. Berglund, A. Johnning, D. G-J. Larsson, E. Kristiansson. Journal of Antimicrobial Chemotherapy, dkaa392, 2 October 2020
Assessment of hindered diffusion in arbitrary geometries using a multiphase DNS framework
A. S. Kannan, A. Mark, D. Maggiolo, G. Sardina, S. Sasic, H. Ström. Chemical Engineering Science, Volume 230, 116074, online 28 September 2020
Multi-objective constrained Bayesian optimization for structural design
A. Mathern, O. Skogby Steinholtz, A. Sjöberg, M. Önnheim, K. Ek, R. Rempling, E. Gustavsson, M. Jirstrand. Structural and Multidisciplinary Optimization, 24 September 2020.
S-RASTER: contraction clustering for evolving data streams
G. Ulm, S. Smith, A. Nilsson, E. Gustavsson, M. Jirstrand. Journal of Big Data Vol. 7, Article number: 62, 13 August 2020.
Model‐based analysis reveals a sustained and dose‐dependent acceleration of wound healing by VEGF‐A mRNA (AZD8601)
J. Almquist, M. Rikard, M. Wågberg, A. C. Bruce, P. Gennemark et al. CPT: Pharmacometrics & Systems Pharmacology (PSP), 21 May 2020.
Cultivation-Free Typing of Bacteria Using Optical DNA Mapping
V. Müller, M. Nyblom, A. Johnning, M. Wrande, A. Dvirnas, S. KK, C. G. Giske, T. Ambjörnsson, L. Sandegren, E. Kristiansson, F. Westerlund. ACS Infectious Diseases 2020, 6, 5, 1076–1084, 15 April 2020.
Computationally efficient viscoelastic flow simulation using a Lagrangian-Eulerian method and GPU-acceleration
S. Ingelsten, A. Mark, K. Jareteg, R. Kádár, F. Edelvik. Journal of Non-Newtonian Fluid Mechanics. Online 18 March 2020, 104264.
Branch-and-bound for the Precedence Constrained Generalized Traveling Salesman Problem
R. Salman, F. Ekstedt, P. Damaschke. Operations Research Letters, Vol. 48, Issue 2, Pages 163-166. March 2020.
Modeling industrial engineering change processes using the design structure matrix for sequence analysis: a comparison of multiple projects
Í Arnarsson, E. Gustavsson, M. Jirstrand, J. Malmqvist. Design Science, 6, E6, 16 March 2020.
Discovery of Species-unique Peptide Biomarkers of Bacterial Pathogens by Tandem Mass Spectrometry-based Proteotyping
R. Karlsson, A. Thorsell, M. Gomila, F. Salvà-Serra, H. E. Jakobsson, L. Gonzales-Siles, D. Jaén-Luchoro, S. Skovbjerg, J. Fuchs, A. Karlsson, F. Boulund, A. Johnning, E. Kristiansson, E. R.B. Moore. Molecular & Cellular Proteomics, Vol. 19, Issue 3, P518-528. 1 March 2020.
Numerical upscaling of discrete network models
G. Kettil, A. Målqvist, A. Mark, M. Fredlund, K. Wester, F. Edelvik, Numerical upscaling of discrete network models. Bit Numer Math 60, 67–92, March 2020.
A continuum-based multiphase DNS method for studying the Brownian dynamics of soot particles in a rarefied gas
A. S. Kannan, A. Mark, V. Naserentin, G. Sardina, D. Maggiolo, S. Sasic, H. Ström. Chemical Engineering Science, Vol. 210, 115229, December 2019.
Numerical investigation of upstream cylinder flow and characterization of forming fabrics
G. Kettil, A. Mark, K. Wester, M. Fredlund, F. Edelvik. Nordic Pulp & Paper Research Journal, 34(3), pp. 371-393. Online 12 July, 2019.
A Virtual Design of Experiments Method to Evaluate the Effect of Design and Welding Parameters on Weld Quality in Aerospace Applications
J. Madrid, S. Lorin, R. Söderberg, P. Hammersberg, K. Wärmefjord, J. Lööf. Aerospace 2019, 6(6), 74. 20 June, 2019
Modeling long-term tumor growth and kill after combinations of radiation and radiosensitizing agents
T. Cardilin, J. Almquist, M. Jirstrand, A. Zimmermann, F. Lignet, S. El Bawab, J. Gabrielsson. Cancer Chemotherapy and Pharmacology, Vol. 83, Issue 6, pp 1159–1173. June 2019.
Nonlinear Material Model in Part Variation Simulations of Sheet Metals
S. Camuz, S. Lorin, K. Wärmefjord, R. Söderberg. J. Comput. Inf. Sci. Eng 19(2), 021012. 18 March, 2019.
Functional Federated Learning in Erlang (ffl-erl)
G. Ulm, E. Gustavsson, M. Jirstrand. Silva J. (eds) Functional and Constraint Logic Programming. WFLP 2018. Lecture Notes in Computer Science, vol 11285. Springer, Cham. Online 16 March, 2019.
Assessing the ability of the Eulerian-Eulerian and the Eulerian-Lagrangian frameworks to capture meso-scale dynamics in bubbly flows
G. Sardina, K. Jareteg, H. Ström, S. Sasic. Chemical Engineering Science, Vol. 201, 29 June 2019, pp. 58-73. Online 1 March, 2019
Challenge model of TNFα turnover at varying LPS and drug provocations
F. Held, E. Hoppe, M. Cvijovic, M. Jirstrand, J. Gabrielsson. J Pharmacokinet Pharmacodyn, P 1-18. 18 February 2019.
A Lagrangian-Eulerian framework for simulation of transient viscoelastic fluid flow
S. Ingelsten, A. Mark, F. Edelvik. Journal of Non-Newtonian Fluid Mechanics, Vol. 266, April 2019, pages 20-32. Online 12 February, 2019.
Modelling of oscillatory cortisol response in horses using a Bayesian population approach for evaluation of dexamethasone suppression test protocols
F. Held, C. Ekstrand, M. Cvijovic, J. Gabrielsson, M. Jirstrand. J Pharmacokinet Pharmacodyn. 23 January, 2019.
Dose-Response-Time Data Analysis: An Underexploited Trinity
J. Gabrielsson, R. Andersson, M. Jirstrand, S. Hjorth. Pharmacol Rev. 2019 Jan;71(1):89-122.
Efficient Compliant Variation Simulation of Spot-Welded Assemblies
S. Lorin, B. S. Lindau, L. Lindkvist, R. Söderberg. Journal of Computing and Information Science in Engineering, 19(1), 011007. 19 November, 2018.
Challenging the dose-response-time data approach: Analysis of a complex system
R. Andersson, M. Jirstrand, J. Almquist, J. Gabrielsson. Eur J Pharm Sci. 2019 Feb 1;128:250-269. Online 17 November, 2018.
Evaluation and translation of combination therapies in oncology
T. Cardilin, J. Almquist, M. Jirstrand, J. Gabrielsson. European Journal of Pharmacology, Vol. 834, 5 September 2018, p 327-336.
An immersed boundary based dynamic contact angle framework for handling complex surfaces of mixed wettabilities
J. Göhl, A. Mark, S. Sasic, F. Edelvik. International Journal of Multiphase Flow, 2018, ISSN 0301-9322, Online 13 August 2018
Minimizing Weld Variation Effects Using Permutation Genetic Algorithms and Virtual Locator Trimming
A. Forslund, S. Lorin, L. Lindkvist, K. Wärmefjord, R. Söderberg. Journal of Computing and Information Science in Engineering 18 (4), 041010, 6 August, 2018.
Exact Gradients Improve Parameter Estimation in Nonlinear Mixed Effects Models with Stochastic Dynamics
H. K. Olafsdottir, J. Leander, J. Almquist, M. Jirstrand. AAPS J (2018) 20: 88. Online 1 August, 2018.
Inverse Dynamics for Discrete Geometric Mechanics of Multibody Systems With Application to Direct Optimal Control
S. Björkenstam, S. Leyendecker, J. Linn, J. S. Carlson, B. Lennartson. ASME. J. Comput. Nonlinear Dynam. 2018;13(10):101001-101001-15, 30 July, 2018.
A splitting algorithm for simulation-based optimization problems with categorical variables
Z. Nedělková, C. Cromvik, P. Lindroth, M. Patriksson, A-B Strömberg. Engineering Optimization, Volume 51, Issue 5, 2019, 815-831. Online 30 July, 2018.
Simulations of 3D bioprinting: predicting bioprintability of nanofibrillar inks
J. Göhl, K. Markstedt, A. Mark, K. Håkansson, P. Gatenholm, F. Edelvik. Biofabrication, Vol. 10, No. 3, 18 June 2018.
A Multiscale Methodology for Simulation of Mechanical Properties of Paper
G. Kettil, A. Målqvist, A. Mark, F. Edelvik, M. Fredlund, K. Wester. 6th European Conference on Computational Mechanics, Glasgow, UK, June 2018.
Multiobjective Optimization of a Heat-Sink Design Using the Sandwiching Algorithm and an Immersed Boundary Conjugate Heat Transfer Solver
T. Andersson, D. Nowak, T. Johnson, A. Mark, F. Edelvik, K. Küfer. ASME. J. Heat Transfer. 2018;140(10):102002-102002-10, 25 May 2018.
An information and simulation framework for increased quality in welded components
R. Söderberg, K. Wärmefjord, J. Madrid, S. Lorin, A. Forslund, L. Lindkvist. CIRP Annals, Online 24 May, 2018.
Robust intersection of structured hexahedral meshes and degenerate triangle meshes with volume fraction applications
F. Svelander, G. Kettil, T. Johnson, A. Mark, A. Logg, F. Edelvik. Numerical Algorithms, 77(4):1029–1068, April 2018.
Selbstprogrammierende Lackierzelle
N. Güttler, O. Tiedje, J, Jonuscheit, F. Edelvik. JOT Journal für Oberflächentechnik, 57(12):16-21, December 2017.
Model-based Evaluation of Radiation and Radiosensitizing Agents in Oncology
T. Cardilin, J. Almquist, M. Jirstrand, A. Zimmermann, S. El Bawab, J. Gabrielsson. CPT: Pharmacometrics & Systems Pharmacology, November 2017.
Overexpressing Cell Systems are a Competitive Option to Primary Adipocytes when Predicting In Vivo Potency of Dual GPR81/GPR109A Agonists
J. Almquist, D. Hovdal, C. Ahlström, O. Fjellström, P. Gennemark, M. Sundqvist. European Journal of Pharmaceutical Sciences, Available online 24 November 2017.
Quantitative Assessment of Drug Delivery to Tissues and Association with Phospholipidosis: A Case Study with Two Structurally Related Diamines in Development
I. Loryan, E. Hoppe, K. Hansen, F. Held, A. Kless , K. Linz, V. Marossek, B. Nolte, P. Ratcliffe, D. Saunders, R. Terlinden, A. Wegert, A. Welbers, O. Will, M. Hammarlund-Udenaes. Mol. Pharmaceutics, 2017, 14 (12), pp 4362–4373, November 3, 2017.
Intersection-Free Geometrical Partitioning of Multirobot Stations for Cycle Time Optimization
E. Åblad, D. Spensieri, R. Bohlin, J. S. Carlson. IEEE Transactions on Automation Science and Engineering, Vol. PP, Issue: 99, p 1-10, , 26 October 2017.
Extending existing structural identifiability analysis methods to mixed-effects models
D. L. I. Janzén, M. Jirstrand, M. J. Chappell, N. D. Evans. Mathematical Biosciences, Vol 295, January 2018, Pages 1-10. Online 26 October 2017.
Math-Based Algorithms and Software for Virtual Product Realization Implemented in Automotive Paint Shops
F. Edelvik, A. Mark, N. Karlsson, T. Johnson, J. S. Carlson. Math for the Digital Factory. Mathematics in Industry, vol 27, pp 231-251, 22 July 2017.
Characterisation of human AV-nodal properties using a network model
M. Wallman, F. Sandberg. Medical & Biological Engineering & Computing, pp 1-13. 13 July 2017 (Epub ahead of print).
Modeling of free fatty acid dynamics: insulin and nicotinic acid resistance under acute and chronic treatments
R. Andersson, T. Kroon, J. Almquist, M. Jirstrand, N. D. Oakes, N.D. Evans, M.J. Chappel, J. Gabrielsson. Journal of Pharmacokinetics and Pharmacodynamics, June 2017, Volume 44, Issue 3, pp 203–222.
Hemostatic effects of the ticagrelor antidote MEDI2452 in pigs treated with ticagrelor on a background of aspirin
S. Pehrsson, K.J. Johansson, A. Janefeldt, A-S Sandinge, S. Maqbool, J. Goodman, J. Sanchez, J. Almquist, P. Gennemark, S. Nylander. J Thromb Haemost 2017; 15: 1213–22. 11 May 2017.
Simulation of adhesive material using a novel viscoelastic stress method
S. Ingelsten, A. Mark, F. Edelvik, P-J Wahlborg. Annual Transactions of the Nordic Rheology Society, Vol. 25, April 2017.
Parameter identifiability of fundamental pharmacodynamic models
L. Bergenholm, D. Janzen, M. Jirstrand, J. Parkinson, J. Yates, N.D. Evans, M.J. Chappell. Frontiers in Physiology, section Computational Physiology and Medicine. 5 December, 2016.
On the advancement and software support of decision-making in focused ultrasound therapy: Advancement and software support of decision-making in FUS
A. Scherrer, S. Jakobsson, K-H Küfer. Journal of Multi-Criteria Decision Analysis 23(5), November 2016
Tumor Static Concentration Curves in Combination Therapy
T. Cardilin, J. Almquist, M. Jirstrand et al. The AAPS Journal, pp 1–12. Online 28 September, 2016.
Geometry Assurance Integrating Process Variation With Simulation of Spring-In for Composite Parts and Assemblies
C. Jareteg, K. Wärmefjord, C. Cromvik, R. Söderberg, L. Lindkvist, J. S. Carlson, F. Edelvik. ASME Journal of Computing and Information Science in Engineering, 16(3), September 2016.
Spectral properties of renormalization for area-preserving maps
D. Gaidashev, T. Johnson. Discrete and Continuous Dynamical Systems - Series A, 36(7):3651-3675, July 2016.
Unraveling the pharmacokinetic interaction of ticagrelor and MEDI2452 (Ticagrelor antidote) by mathematical modeling
J. Almquist, M. Penney, S. Pehrsson, A-S Sandinge, A. Janefeldt, S. Maqbool, S. Madalli, J. Goodman, S. Nylander, P. Gennemark. CPT: Pharmacometrics & Systems Pharmacology (Online 16 June, 2016).
Three novel approaches to structural identifiability analysis in mixed-effects models
D. L.I. Janzén, M. Jirstrand, M. J. Chappell, N. D. Evans. Computer Methods and Programs in Biomedicine, Online 6 May, 2016.
The Laplace multi-axial response model for fatigue analysis
J. Karlsson, K. Podgórski, I. Rychlik. International Journal of Fatigue, Vol 85, pages 11–17, April 2016.
An Iterative Approach for Collision Free Routing and Scheduling in Multirobot Stations
D. Spensieri, J.S. Carlson, F. Ekstedt, R. Bohlin. IEEE Transactions on Automation Science and Engineering (Volume: 13, Issue: 2), 5 April, 2016, pages 950-962.
Fast exact shortest distance queries for massive point clouds
D. Eriksson, E. Shellshear. Graphical Models, Online 19 March, 2016 (In press).
Investigating a Novel Activation-Repolarisation Time Metric to Predict Localised Vulnerability to Reentry Using Computational Modelling
Y.R. Hill, N. Child, B. Hanson, M. Wallman, R. Coronel, G. Plank, C.A. Rinaldi, J. Gill, N.P. Smith, P. Taggart, M. Bishop (2016), PLoS One, 11(3), e0149342, 2 March, 2016.
Controlling Geometrical Variation Caused by Assembly Fixtures
K. Wärmefjord, J. S. Carlson, R. Söderberg. RASME. Journal of Computing and Information Science Engineering February 17, 2016;16(1): 011007-011007-8.
Simulation of the spherical orientation probability distribution of paper fibers in an entire suspension using immersed boundary methods
T. Johnson, P. Röyttä, A. Mark, F. Edelvik. Journal of Non-Newtonian Fluid Mechanics, 229:1-7, March 2016.
Rigidity for infinitely renormalizable area-preserving maps
D. Gaidashev, T. Johnson, M. Martens. Duke Mathematical Journal, Volume 165, Number 1 (2016), 129-159
Creating and shaping the DHM tool IMMA for ergonomic product and production design
D. Högberg, L. Hanson, R. Bohlin, J. S. Carlson. International Journal of the Digital Human 1 (2), 132-152, January 2016.
Dose-response-time modelling: Second-generation turnover model with integral feedback control
R. Andersson, M. Jirstrand, L. Peletier, M. J. Chappell, N. D. Evans, J. Gabrielsson. European Journal of Pharmaceutical Sciences, Vol 81, 1 January 2016, 189–200
Space Boards: Combining Tangible Interfaces with the Surrounding Space via RGB-D Cameras
E. Shellshear. International Journal of Creative Interfaces and Computer Graphics (IJCICG), 7(1), 40-56, January 2016.
Efficient Contact Modeling in Non-Rigid Variation Simulation
B. Lindau, S. Lorin, L. Lindkvist, R. Söderberg. Efficient Contact Modeling in Non-Rigid Variation Simulation. ASME. Journal of Computing and Information Science in Engineering. November 26, 2015.
A multi-scale simulation method for the prediction of edge wicking in multi-ply paperboard
T. Johnson, A. Mark, J. Nyström, S. Rief, M. Fredlund, M. Rentzhog, U. Nyman, J. Tryding, R. Lai, L. Martinsson, K. Wester and F. Edelvik. Nordic Pulp & Paper Research Journal, 2015, 30(4), 640-650
Human-based approaches to pharmacology and cardiology: An interdisciplinary and intersectorial workshop
Rodriguez et al. 2015. Accepted for publication in Europace.
A domain decomposition method for three species modeling of multi-electrode negative corona discharge – With applications to electrostatic precipitators
B. Wettervik, T. Johnson, S. Jakobsson, A. Mark, F. Edelvik. Journal of Electrostatics, 2015, 77, 139-146.
Bile canalicular dynamics in hepatocyte sandwich cultures
R. Reif, J. Karlsson, G. Günther, L. Beattie, D. Wrangborg, S. Hammad, B. Begher-Tibbe, A. Vartak, S. Melega. P.M. Kaye, J.G. Hengstler, M. Jirstrand. Archives of Toxicology, August 18, 2015, Journal no. 204
An Iterative Approach for Collision Free Routing and Scheduling in Multirobot Stations
D. Spensieri, J. S. Carlson, F. Ekstedt, R. Bohlin. IEEE TRANSACTIONS ON AUTOMATION SCIENCE AND ENGINEERING. June 1, 2015, PP(99), 1-13.
A Nonlinear Mixed Effects Approach for Modeling the Cell-To-Cell Variability of Mig1 Dynamics in Yeast
J. Almquist, L. Bendrioua, C. Beck Adiels, M. Goksör, S. Hohmann, M. Jirstrand. PLOS ONE, April 20, 2015.
Welding Simulation of Non-Nominal Structures With Clamps
S. Lorin, C. Cromvik, F. Edelvik, R. Söderberg. Journal of Computing and Information Science in Engineering, 15(2), April 08, 2015.
Using sensitivity equations for computing gradients of the FOCE and FOCEI approximations to the population likelihood
J. Almquist, J. Leander, M. Jirstrand, Journal of Pharmacokinetics and Pharmacodynamics, June 2015, 42:3, 191-209.
BVH Split Strategies for Fast Distance Queries
R. Ytterlid, E. Shellshear, Journal of Computer Graphics Techniques (JCGT), vol. 4, no. 1, 1-25, 2015
Direct Liquid Cooling for an Outer-Rotor Direct-Drive Permanent-Magnet Synchronous Generator for Wind Farm Applications
M. Polikarpova, P. Ponomarev, P. Röyttä, R. S. Semken, Y. Alexandrova, J. Pyrhönen, IET Electric Power Applications, Volume 9, Issue 8, September 2015, p. 523 – 532.
Mixed Effects Modeling Using Stochastic Differential Equations: Illustrated by Pharmacokinetic Data of Nicotinic Acid in Obese Zucker Rats
J. Leander, J. Almquist, C. Ahlström, J. Gabrielsson, M. Jirstrand, The AAPS Journal, 2015, doi:10.1208/s12248-015-9718-8
A finite volume method for electrostatic three species negative corona discharge simulations with application to externally charged powder bells
T. Johnson, S. Jakobsson, B. Wettervik, B. Andersson, A. Mark, F. Edelvik. Journal of Electrostatics, 2015, 74, 27–36.
Fast Distance Queries for Triangles, Lines, and Points using SSE Instructions
E. Shellshear, R. Ytterlid, Journal of Computer Graphics Techniques (JCGT), December 2014, vol. 3, no. 4, 86-110
Joint Feedback Analysis Modeling of Nonesterified Fatty Acids in Obese Zucker Rats and Normal Sprague–Dawley Rats after Different Routes of Administration of Nicotinic Acid
S. Tapani, J. Almquist, J. Leander, C. Ahlström, L. A. Peletier, M. Jirstrand, J. Gabrielsson. Journal of Pharmaceutical Sciences, August, 2014, 103(8), 2571–2584.
Optimisation of robotised sealing stations in paint shops by process simulation and automatic path planning
A. Mark, R. Bohlin, D. Segerdahl, F. Edelvik, J. S. Carlson, International Journal of Manufacturing Research, 2014, 9(1), 4–26.
Kinetic models in industrial biotechnology – Improving cell factory performance
J. Almquist, M. Cvijovic, V. Hatzimanikatis, J. Nielsen, M. Jirstrand. Metabolic Engineering, July, 2014, 24, 38-60.
Simulation of a highly elastic structure interacting with a two-phase flow
E. Svenning, A. Mark and F. Edelvik, Journal of Mathematics in Industry, June 3, 2014, 4:7.
1D sweep-and-prune self-collision detection for deforming cables
E. Shellshear, The Visual Computer, May 2014, 30(5), 553-564.
Yeast AMP-Activated Protein Kinase Monitors Glucose Concentration Changes as well as Absolute Glucose Levels
L. Bendrioua, M. Smedh, J. Almquist, M. Cvijovic, M. Jirstrand, M. Goksör, C. Adiels, and S. Hohmann. The Journal of Biological Chemistry, May 2, 2014, 289, 12863-12875.
Stochastic differential equations as a tool to regularize the parameter estimation problem for continuous time dynamical systems given discrete time measurements
J. Leander, T. Lundh, and M. Jirstrand. Mathematical Biosciences, May 2014, 251, 54–62.
Variation Simulation of Welded Assemblies Using a Thermo-Elastic Finite Element Model
S. Lorin, C. Cromvik, F. Edelvik, L. Lindkvist, R. Söderberg, Journal of Computing and Information Science in Engineering, Apr 28, 2014, 14(3), 031003, 6 pages.
Bridging the gaps in systems biology
M. Cvijovic, J. Almquist, J. Hagmar, S. Hohmann, H.-M. Kaltenbach, E. Klipp, M. Krantz, P. Mendes, S. Nelander, J. Nielsen, A. Pagnani, N. Przulj, A. Raue, J. Stelling, S. Stoma, F. Tobin, J.A.H. Wodke, R. Zecchina, M. Jirstrand. Molecular Genetics and Genomics, 2014, 289(5), 727-734.
A multi-threaded algorithm for computing the largest non-colliding moving geometry
E. Shellshear, S. Tafuri, J. S. Carlson, Computer-Aided Design, April, 2014, 49, 1–7.
Influence of the axial turbine design parameters on the stator–rotor axial clearance losses
A. Grönman, T. Turunen-Saaresti, P. Röyttä, A. Jaatinen-Värri. Proceedings of the Institution of Mechanical Engineers, Part A: Journal of Power and Energy August 2014 vol. 228 no. 5 482-490.
Comparison of approaches for parameter identifiability analysis of biological systems
A. Raue, J. Karlsson, M.P. Saccomani, M. Jirstrand, J. Timmer, Bioinformatics, May 2014, 30(10), 1440-8.
Using a formal high-level language and an automated manikin to automatically generate assembly instructions
P. Mårdberg, J. S. Carlson, R. Bohlin, N. Delfs, S. Gustafsson, D. Högberg, L. Hanson. Int. J. of Human Factors Modelling and Simulation, 2014 Vol.4, No.3/4, pp.233 - 249
Particle Swarm Optimization Applied to EEG Source Localization of Somatosensory Evoked Potentials
Y. Shirvany, Q. Mahmood, F. Edelvik, S. Jakobsson, A. Hedström, M. Persson. IEEE Transactions on Neural Systems and Rehabilitation Engineering, January 2014, Vol. 22 (1), 11-20.
Computational methods to reduce uncertainty in the estimation of cardiac conduction properties from electroanatomical recordings
M. Wallman, N.P Smith, B. Rodriguez. Medical Image Analysis, 2014, 18(1):228 - 240.
Maxsim2—Real-time interactive simulations for computer-assisted teaching of pharmacokinetics and pharmacodynamics
J. Gabrielsson, K. Andersson, G. Tobin, C. Ingvast-Larsson, and M. Jirstrand. Computer Methods and Programs in Biomedicine. December 2013, 113(3):815-829.
An Industrially Validated Method for Weld Load Balancing in Multi Station Sheet Metal Assembly Lines
J. Segeborn, D. Segerdahl, F. Ekstedt, J. S. Carlson, M. Andersson, A. Carlsson, R. Söderberg. Journal of Manufacturing Science and Engineering, Nov 5, 2013, 136(1), 011002.
Laplace moving average model for multi-axial responses applied to fatigue analysis of a cultivator
M. Kvarnström , K. Podgórski, I. Rychlik. Probabilistic Engineering Mechanics, October 2013, 34, 12–25.
A Modified TAB Model for Simulation of Atomization in Rotary Bell Spray Painting
B. Andersson, V. Golovitchev, S. Jakobsson, A. Mark, F. Edelvik, L. Davidson, J. S. Carlson. Journal of Mechanical Engineering and Automation 2013, 3(2), 54-6.
Simulation of electrostatic rotary bell spray painting in automotive paint shops
A. Mark, B. Andersson, S. Tafuri, K. Engström, H. Söröd, F. Edelvik, J. S. Carlson, Automization & Sprays, 2013, 23(1), 25-45.
Evaluation of a Finite-Element Reciprocity Method for Epileptic EEG Source Localization: Accuracy, Computational Complexity and Noise Robustness
Y. Shirvany, T. Rubaek, F. Edelvik, S. Jakobsson, O. Talcoth, M. Persson, Biomedical Engineering Letters, March 2013, 3(1), 8-16.
Application of particle swarm optimization in epileptic spike EEG source localization
Y. Shirvany, F. Edelvik, S. Jakobsson, A. Hedström, M. Persson. Applied Soft Computing, May 2013, 13(5), 2515–2525.
An immersed boundary method for simulation of flow with heat transfer
A. Mark, E. Svenning, F. Edelvik, International Journal of Mass and Heat Transfer, 2013, 56(1-2), 424-435.
Automatic assembly path planning for wiring harness installations
T. Hermansson, R. Bohlin, J. S. Carlson, R. Söderberg. Journal of manufacturing systems, July 31, 2013, 32(3), 417-422.
Non-nominal path planning for robust robotic assembly
J. S. Carlson, D. Spensieri, R. Söderberg, R. Bohlin, L. Lindkvist. Journal of manufacturing systems, July 31, 2013, 32(3), 429-435
Combining Variation Simulation With Thermal Expansion Simulation for Geometry Assurance
S. Lorin, L. Lindkvist, R. Söderberg, R. Sandboge. Journal of Computing and Information Science in Engineering, July 22, 2013, 13(3), 031007.
Geometric variation simulation and robust design for flexible cables and hoses
T. Hermansson, J. S. Carlson, S. Björkenstam, R. Söderberg. Proceedings of the Institution of Mechanical Engineers, Part B: Journal of Engineering Manufacture, May 1, 2013, 227(5), 681-689.
PDQ: Parallel Distance Queries for deformable meshes
E. Shellshear, F. Bitar, U. Assarsson. Graphical Models, March 2013, 75(2), 69–78.
Towards Quantifying the Thymic Dysfunction State in Mouse Models of Inflammatory Bowel Disease
A. Jansson, A.-K. Pernestig, P. Nilsson, M. Jirstrand, E. Hultgren-Hörnquist, Inflammatory Bowel Diseases, March 1, 2013, 19(4), 881-8.
A continuous-time adaptive particle filter for estimations under measurement time uncertainties with an application to a plasma-leucine mixed effects model
A. Krengel, J. Hauth, M.-R. Taskinen, M. Adiels, and M. Jirstrand. BMC Systems Biology, January 19, 2013, 7:8.
Heterogeneous kinetics of AKT signaling in individual cells are accounted for by variable protein concentration
R. Meyer, L. D`Alessandro, S. Kar, B. Kramer, B. She, D. Kaschek, B. Hahn, D. Wrangborg, J. Karlsson, M. Kvarnstrom, M. Jirstrand, W.-D. Lehmann, J. Timmer, T. Höfer, U. Klingmüller, Frontiers in Physiology. 2012, 3, 451.
Multi-scale Simulation of Paperboard Edge Wicking Using a Fiber-resolving Virtual Paper Model
A. Mark, A. Berce, R. Sandboge, F. Edelvik, E. Glatt, S. Rief, A. Wiegmann, M. Fredlund, J. Amini, M. Rentzhog, R. Lai, L. Martinsson, U. Nyman, J. Tryding, Tappi Journal, 11(6):9-16, 2012.
Multiphase Simulation of Fiber Suspension Flows Using Immersed Boundary Methods
E. Svenning, A. Mark, F. Edelvik, E. Glatt, S. Rief, A. Wiegmann, L. Martinsson, R. Lai, M. Fredlund, U. Nyman, Nordic Pulp & Paper Research Journal, 27(2):184-191, 2012.
Modeling and Simulation of Paperboard Edge Wicking
A. Mark, J. Tryding, J. Amini, F. Edelvik, M. Fredlund, E. Glatt, R. Lai, L. Martinsson, U. Nyman, M. Rentzhog, S. Rief, A. Wiegmann. Nordic Pulp & Paper Research Journal, 2012, 27, 2, 397-402.
A Comparative Study of Graph-Based, Eikonal, and Monodomain Simulations for the Estimation of Cardiac Activation Times
M. Wallman, N. P. Smith, B. Rodriguez, IEEE Transactions on Biomedical Engineering, Vol. 59, No. 6, N/A, 06.2012, p. 1739-1748.
Minimal Output Sets for Identifiability
M. Anguelova, J. Karlsson, and M. Jirstrand. Mathematical Biosciences, May 16, 2012, 239, 1, 139–153.
Investigations of a compartmental model for leucine kinetics using non-linear mixed effects models with ordinary and stochastic differential equations
M. Berglund, M. Sunnåker, M. Adiels, M. Jirstrand, and B. Wennberg. Mathematical Medicine and Biology, 30 September 2011.
A Method for Zooming of Nonlinear Models of Biochemical Systems
M. Sunnåker, G. Cedersund, M. Jirstrand. BMC Systems Biology, September 7, 2011, 5, 140.
Microstructure simulation of early paper forming using immersed boundary methods
A Mark, E Svenning, R Rundqvist, F Edelvik, E Glatt, S Rief, A Wiegmann, M Fredlund, R Lai, L Martinsson, U Nyman, Tappi Journal, 10(11):23-30, 2011.
Comparison Between Different Immersed Boundary Conditions for Simulation of Complex Fluid Flows
A Mark, R Rundqvist, F Edelvik, Journal of Fluid Dynamics & Materials Processing, 7(3):241-258, 2011.
Modeling and Simulation of Sealing Spray Application Using Smoothed Particle Hydrodynamics
R Rundqvist, A Mark, F Edelvik, J S Carlson, Journal of Fluid Dynamics & Materials Processing, 7(3):259-278, 2011.
A Kinetic Model of the Monocarboxylate Transporter MCT1 and its Interaction with Carbonic Anhydrase II
J. Almquist, P. Lang, D. Prätzel-Wolters, J. W. Deitmer, M. Jirstrand, and H. M. Becker, Journal of Computer Science & Systems Biology, 3: 107-116, 27 November 2010.
Modeling the Effect of Kv1.5 Block on the Canine Action Potential
J. Almquist, M. Wallman, I. Jacobson, and M. Jirstrand. Biophysical Journal, Volume 99, Issue 9, Pages 2726-2736, 3 November 2010.
Modeling and simulation of viscoelastic fluids using Smoothed Particle Hydrodynamics
R. Rundqvist, A. Mark, F. Edelvik, J. S. Carlson, 7th International Conference on Multiphase Flow (ICMF), 2010.
Combustion engine optimization: a multiobjective approach
S. Jakobsson, M. Saif-Ul-Hasnain, R. Rundqvist, F. Edelvik, B. Andersson, M. Patriksson, M. Ljungqvist, D. Lortet, J. Wallesten. Optimization and Engineering, 2010, 11(4), 533-554.
A method for simulation based optimization using radial basis functions
S. Jakobsson, M. Patriksson, J. Rudholm, A. Wojciechowski. Optimization and Engineering, 2010, 11(4), 501-532.
An investigation of the effect of sample size on geometrical inspection point reduction using cluster analysis
K. Wärmefjord, J. S. Carlson, R. Söderberg. CIRP Journal of Manufacturing Science and Technology, 2010, 3, 227–235.
Simulation of Spray Painting in Automotive Industry
R. Rundqvist, A. Mark, B. Andersson, A. Ålund, F. Edelvik, S. Tafuri, J. S. Carlson, In G. Kreiss et al. (eds.), Numerical Mathematics and Advanced Applications 2009, 769-777. 30 July, 2010.
Improving Bayesian credibility intervals for classifier error rates using maximum entropy empirical priors
M. G. Gustafsson, M. Wallman, U. Wickenberg, H. Göransson, M. Fryknäs, C.R. Andersson, A. Isaksson. Artificial Intelligence in Medicine, Volume 49, Issue 2, June 2010, Pages 93–104
Biochemical Modeling with Systems Biology Graphical Notation
A. Jansson, M. Jirstrand. Drug Discovery Today, May 2010, 15(9-10), 365-370.
Rational radial basis function interpolation with applications to antenna design
S. Jakobsson, B. Andersson, F. Edelvik. Journal of Computational and Applied Mathematics, December 2009, 233(4), 889-904.
Introducing fast robot roller hemming process in automotive industry
B. Saboori, J. S. Carlson, R. Söderberg, World Academy of Science, Engineering and Technology, October, 2009, 58, 503-506.
A Measure of the Information Loss for Inspection Point Reduction
K. Wärmefjord, J. S. Carlson, R. Söderberg. Journal of Manufacturing Science and Engineering, Sep 25, 2009, 131(5), 051017.
Brownian dynamics simulations in hydrogels using an adaptive time-stepping algorithm
M. Kvarnström, A. Westergård, N. Lorén, M. Nydén. Physical Review, Jan 8, 2009, Epub 79, 016102.
Complexity Reduction of Biochemical Rate Expressions
H. Schmidt, M. F. Madsen, S. Danø, G. Cedersund. Bioinformatics, 2008, 24(6), 848-54.
Cross-validation and bootstrapping are unreliable in a small sample classification
A. Isaksson, M. Wallman, H. Göransson, and M.G. Gustafsson. Pattern Recognition Letters, 2008, 29(14), 1960-1965.
Image analysis in nonlinear microscopy
J. Hagmar, C. Brackmann, T, Gustavsson, and A. Enejder. Journal of the Optical Society of America A, 25(9): 2195-2206, 2008.
Image analysis algorithms for cell contour recognition in budding yeast
M. Kvarnström, K. Logg, A. Diez, K. Bodvard, and M. Käll. Optics Express, 2008, 16, 12943-57.
Time Domain Finite Element Modeling of Thin Sheets and Coatings using Shell Elements
F. Edelvik, E. Abenius. In EMB07, Lund, Sweden, pp. 35-41, October 2007.
Virtuelle Blitzeinschläge – Blitze abblitzen lassen
F. Edelvik, Innovisions - Das Zukunftsmagazin des Fraunhofer-IuK-Verbunds, 2007, 4, 68-70.
Systems Biology May Radically Change Healthcare – Individually Based Prediction, Prevention, and Treatment
M. Benson, L.-O. Cardell, S. Hohmann, M. Jirstrand, M. Langston, R. Mobini, and O. Nerman. Läkartidningen, 2007, 104(42), 3037-3041.
SBaddon: High Performance Simulation for the Systems Biology Toolbox for MATLAB
H. Schmidt. Bioinformatics, 2007, 23(5), 646-647.
Conservation laws and unidentifiability of rate expressions in biochemical models
M. Anguelova, G. Cedersund, M. Johansson, C.J. Franzén, B. Wennberg. IET Systems Biology, July 2007, 1(4), 230-237.
Estimation of centres and radial intensity profiles of spherical nano-particles in digital microscopy
M. Kvarnström and C.A. Glasbey. Biometrical Journal, Apr 2007, Volume 49 (2):300-11.
Identification of the three-dimensional gel microstructure from transmission electron micrographs
R. Nisslert, M. Kvarnström, N. Lorén, M. Nydén, and M. Rudemo. Journal of Microscopy, Jan 2007, 225(1), 10-21.
Fast Simulation of Quasistatic Rod Deformations for VR Applications
J. Linn, T. Stephan, J. Carlsson, R. Bohlin, Progress in Industrial Mathematics at ECMI 2006, 12, 247-253.
Thin Sheet Modeling Using Shell Elements in the Finite-Element Time-Domain Method
E. Abenius, F. Edelvik, IEEE Transaction and Antennas and Propagation, 2006, 54(1), 28-34.
Managing Physical Dependencies through Location System Design
R. Söderberg, L. Lindkvist, J. S. Carlson. Journal of Engineering Design, 2006, 17(2), 325-346.
Information Technology in Systems Biology
H. Schmidt, M. Jirstrand, and O. Wolkenhauer. Invited article for it-Information Technology, 2006, 48(3), 133-139.
Systems Biology Toolbox for MATLAB: A computational platform for research in Systems Biology
H. Schmidt and M. Jirstrand. Bioinformatics, 2006, 22(4), 514-515.
Advances in Hybrid FDTD-FE Techniques
T. Rylander, F. Edelvik, A. Bondeson, D. J. Riley, In "Computational Electrodynamics: The Finite-Difference Time-Domain Method", 3rd edition, A. Taflove, S. Hagness (eds.), Artech House, Boston:MA, 2005.
Assembly Root Cause Analysis: A Way to Reduce Dimensional Variation in Assembled Products
J. S. Carlson, R. Söderberg. International Journal of Flexible Manufacturing Systems, April 2003, 15(2), 113-150.
Quadratic Sensitivity Analysis of Fixtures and Locating Scheme for Rigid Parts
J. S. Carlson, R. Söderberg. ASME Journal of Manufacturing Science and Engineering, 2001, 123(3), 462-472.